Hyun-Sik Yang, United States of America
Brigham and Women's Hospital NeurologyPresenter of 2 Presentations
LIVE DISCUSSION
GENOME-WIDE ASSOCIATION STUDY IMPLICATES APOE, GRM8, AND TYPE I INTERFERON PATHWAY IN LIMBIC-PREDOMINANT AGE-RELATED TDP-43 ENCEPHALOPATHY PATHOGENESIS
Abstract
Aims
To elucidate the genetic architecture of limbic-predominant age-related TDP-43 encephalopathy neuropathological change (LATE-NC), a common TDP-43 proteinopathy that is frequently comorbid with Alzheimer’s disease (AD) and increases dementia risk.
Methods
We studied the Religious Orders Study and the Rush Memory and Aging Project participants of European ancestry with imputed genotypes and post-mortem TDP-43 immunohistochemistry (n=1,180). TDP-43, amyloid-β (Aβ), and paired helical filament tau (PHFtau) were quantified using immunohistochemistry. LATE-NC burden was defined as a semi-quantitative six-point scale of TDP-43 burden averaged across six brain regions including amygdala, hippocampus, and neocortex. Genome-wide association study (GWAS) was performed using linear additive models controlling for age, sex, genotyping platform, and first three principal components from the genotype covariance matrix.
Results
Two distinct loci reached genome-wide significance in their association with higher LATE-NC burden: rs429358C, an allele defining the APOE ε4 haplotype (beta=0.46, p=1.2×10-12); rs17608393A within GRM8 (beta=0.68, p=4.5×10-8). There were 10 additional loci that reached pre-defined suggestive significance (p<10-6). A suggestive variant rs72701368G (beta=0.54, p=1.1×10-7) tagged a large haplotype spanning the interferon-alpha (IFNA) gene cluster, and another suggestive variant rs56902449A (beta=0.72, p=8.0×10-7) was a cis-eQTL increasing the expression of MX2, a gene encoding interferon-induced GTP-binding protein Mx2. After adjusting for Aβ and PHFtau, the association between APOE rs429358C and LATE-NC was partially attenuated (beta=0.28, p=2.6×10-5), while GRM8 and IFNA variants’ association with LATE-NC remained similar.
Conclusions
AD-related APOE locus and AD-independent GRM8 locus were associated with LATE-NC burden, and converging evidence also implicated type I interferon pathway that is regulated by TBK1 (a FTD/ALS risk gene).